General Usage of Quest - Revision history

Homa: added command to specify partition

2016-05-14T15:53:18Z

added command to specify partition

← Older revision		Revision as of 10:53, 14 May 2016
Line 109:		Line 109:
	</pre>		</pre>
	This command displays detailed information about a submitted job’s status and diagnostic information that can be useful for troubleshooting submission issues. It can also be used to obtain useful information about completed jobs such as the allocated nodes, resources used, and exit codes. NUIT recommends using the flag ‘–vvv’ or ‘–v –v –v’ to gather additional diagnostic information.		This command displays detailed information about a submitted job’s status and diagnostic information that can be useful for troubleshooting submission issues. It can also be used to obtain useful information about completed jobs such as the allocated nodes, resources used, and exit codes. NUIT recommends using the flag ‘–vvv’ or ‘–v –v –v’ to gather additional diagnostic information.
			<pre>
			mjobctl -m partition=<partition name> <job number>
			</pre>
			This command specifies a partition for a job which is already in the queue. This can be useful if you forget to specify a particular partition in the batch file (or if you want to change the partition, for example from quest3 to quest4), as it allows you to do so without having to delete and resubmit the jobs.
	</ul>		</ul>

2015-09-29T18:43:18Z

← Older revision		Revision as of 13:43, 29 September 2015
Line 108:		Line 108:
	checkjob [job_ID]		checkjob [job_ID]
	</pre>		</pre>
	This command displays detailed information about a submitted job’s status and diagnostic information that can be useful for troubleshooting submission issues. It can also be used to obtain useful information about completed jobs such as the allocated nodes, resources used, and exit codes. NUIT recommends using the flag ~~‘-vvv’~~ or ~~‘-v~~ –v –v’ to gather additional diagnostic information.		This command displays detailed information about a submitted job’s status and diagnostic information that can be useful for troubleshooting submission issues. It can also be used to obtain useful information about completed jobs such as the allocated nodes, resources used, and exit codes. NUIT recommends using the flag ‘–vvv’ or ‘–v –v –v’ to gather additional diagnostic information.
	</ul>		</ul>

2015-09-29T18:42:04Z

← Older revision		Revision as of 13:42, 29 September 2015
Line 100:		Line 100:
	showq -w acct=[account number]		showq -w acct=[account number]
	</pre>		</pre>
	show jobs belonging to the account specified. Grail allocation account number: b1011; CCTSM allocation account number:b1023; ESAM allocation account number: b1020.		show jobs belonging to the account specified. Grail allocation account number: b1011; CCTSM allocation account number: b1023; ESAM allocation account number: b1020.
	<pre>		<pre>
	qstat		qstat

2015-09-29T18:41:54Z

← Older revision		Revision as of 13:41, 29 September 2015
Line 96:		Line 96:
	showq -w user=[netid]		showq -w user=[netid]
	</pre>		</pre>
	~~where [netid] is your NETID. This command will~~ show ~~only~~ jobs belonging to the user specified.		show jobs belonging to the user specified, where [netid] is your NETID.
	<pre>		<pre>
	showq -w acct=[account number]		showq -w acct=[account number]

2015-09-29T18:41:14Z

← Older revision		Revision as of 13:41, 29 September 2015
Line 96:		Line 96:
	showq -w user=[netid]		showq -w user=[netid]
	</pre>		</pre>
	where [netid] is your NETID. This command will show only jobs belonging to user specified.		where [netid] is your NETID. This command will show only jobs belonging to the user specified.
			<pre>
			showq -w acct=[account number]
			</pre>
			show jobs belonging to the account specified. Grail allocation account number: b1011; CCTSM allocation account number:b1023; ESAM allocation account number: b1020.
	<pre>		<pre>
	qstat		qstat

2015-03-25T18:38:10Z

← Older revision		Revision as of 13:38, 25 March 2015
Line 64:		Line 64:

	<tt>[directory_name]</tt>		<tt>[directory_name]</tt>
	This is the address of lammps executable.		This is the address of the lammps executable.

	<tt>[lammps_version]</tt>		<tt>[lammps_version]</tt>
	This is the build of lammps you want to run. Must be in [directory_name]		This is the build of lammps you want to run. Must be in [directory_name].

	</li>		</li>

2015-03-25T17:24:22Z

← Older revision		Revision as of 12:24, 25 March 2015
Line 37:		Line 37:
	#MOAB -S /bin/bash		#MOAB -S /bin/bash

			module load [module]
	cd /projects/b1011/luijten-group/[job_location]		cd /projects/b1011/luijten-group/[job_location]
	time mpirun -np 12 [directory_name]/~~lmp2013_mpi~~ -in input.dat		time mpirun -np 12 [directory_name]/[lammps_version] -in input.dat

	if [ $? -eq 0 ] ; then		if [ $? -eq 0 ] ; then
Line 55:		Line 56:
	<tt>[email_address]</tt>		<tt>[email_address]</tt>
	This is the email address you used to receive the system notice when job begins, aborted or ended.		This is the email address you used to receive the system notice when job begins, aborted or ended.

			<tt>[module]</tt>
			Load a module. For mpirun this would be the module mpi. For full list of available modules run <i>module available</i> from the command line.

	<tt>[job_location]</tt>		<tt>[job_location]</tt>
Line 60:		Line 64:

	<tt>[directory_name]</tt>		<tt>[directory_name]</tt>
	This is the address of ~~lmp2013_mpi~~ ~~file~~.		This is the address of lammps executable.

			<tt>[lammps_version]</tt>
			This is the build of lammps you want to run. Must be in [directory_name]

	</li>		</li>

2014-08-01T16:26:36Z

← Older revision		Revision as of 11:26, 1 August 2014
Line 66:		Line 66:
	<pre>		<pre>
	msub job.mbs		msub job.mbs
			</pre>
			</li>
			<li>Cancel jobs
			<pre>
			canceljob [job_number]
			canceljob `seq [first_job_number] [last_job_number]`
	</pre>		</pre>
	<li>Check job status		<li>Check job status

2014-07-16T16:08:30Z

2014-07-16T16:07:34Z

← Older revision		Revision as of 11:07, 16 July 2014
Line 12:		Line 12:
	# ### AUTOMATICALLY GENERATED BATCH FILE		# ### AUTOMATICALLY GENERATED BATCH FILE
	#MOAB -q [queue_name]		#MOAB -q [queue_name]
	#MOAB -l advres=grail
	#MOAB -A b1011		#MOAB -A b1011
	#MOAB -l walltime=[dd:hh:mm:ss]		#MOAB -l walltime=[dd:hh:mm:ss]